ProteoWizard
IOTest.cpp
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1 //
2 // $Id: IOTest.cpp 4129 2012-11-20 00:05:37Z chambm $
3 //
4 //
5 // Original author: Matt Chambers <matt.chambers .@. vanderbilt.edu>
6 //
7 // Copyright 2009 Vanderbilt University - Nashville, TN 37232
8 //
9 // Licensed under the Apache License, Version 2.0 (the "License");
10 // you may not use this file except in compliance with the License.
11 // You may obtain a copy of the License at
12 //
13 // http://www.apache.org/licenses/LICENSE-2.0
14 //
15 // Unless required by applicable law or agreed to in writing, software
16 // distributed under the License is distributed on an "AS IS" BASIS,
17 // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
18 // See the License for the specific language governing permissions and
19 // limitations under the License.
20 //
21 
22 
23 #include "IO.hpp"
24 #include "Diff.hpp"
25 #include "examples.hpp"
28 
29 using namespace pwiz::cv;
30 using namespace pwiz::util;
31 using namespace pwiz::minimxml;
32 using namespace pwiz::tradata;
33 using boost::iostreams::stream_offset;
34 
35 
36 ostream* os_ = 0;
37 
38 
39 template <typename object_type>
40 void testObject(const object_type& a)
41 {
42  if (os_) *os_ << "testObject(): " << typeid(a).name() << endl;
43 
44  // write 'a' out to a stream
45 
46  ostringstream oss;
47  XMLWriter writer(oss);
48  IO::write(writer, a);
49  if (os_) *os_ << oss.str() << endl;
50 
51  // read 'b' in from stream
52 
53  object_type b;
54  istringstream iss(oss.str());
55  IO::read(iss, b);
56 
57  // compare 'a' and 'b'
58 
60  if (diff && os_) *os_ << "diff:\n" << diff << endl;
61  unit_assert(!diff);
62 
63 
64 }
65 
66 
67 void testCV()
68 {
69  CV a;
70  a.URI = "abcd";
71  a.id = "efgh";
72  a.fullName = "ijkl";
73  a.version = "mnop";
74 
75  testObject(a);
76 }
77 
78 
80 {
81  UserParam a;
82  a.name = "abcd";
83  a.value = "efgh";
84  a.type = "ijkl";
85  a.units = UO_minute;
86 
87  testObject(a);
88 }
89 
90 
92 {
93  CVParam a(MS_selected_ion_m_z, "810.48", MS_m_z);
94  testObject(a);
95 
96  CVParam b(UO_second, "123.45");
97  testObject(b);
98 }
99 
100 
101 template <typename object_type>
103 {
104  object_type a;
105  a.userParams.push_back(UserParam("goober", "goo", "peanuts"));
106  a.cvParams.push_back(CVParam(MS_ionization_type, "420"));
107  a.cvParams.push_back(CVParam(MS_selected_ion_m_z, "666", MS_m_z));
108  testObject(a);
109 }
110 
111 
113 {
114  Software a;
115  a.id = "goober";
117  a.version = "4.20";
118  testObject(a);
119 }
120 
121 
122 /*void testInstrument()
123 {
124  Instrument a;
125  a.id = "LCQ Deca";
126  a.cvParams.push_back(MS_LCQ_Deca);
127  a.cvParams.push_back(CVParam(MS_instrument_serial_number, 23433));
128  testObject(a);
129 }
130 
131 void testConfiguration()
132 {
133  Configuration a;
134  a.instrumentPtr = "LCA Deca";
135  a.contactPtr = "Bob";
136  a.cvParams.push_back(CVParam(MS_ionization_type, "420"));
137 }*/
138 
139 
140 /*void testPrecursor()
141 {
142  Precursor a;
143  a.mz = 123.45;
144  a.charge = 2;
145  testObject(a);
146 
147  Precursor b;
148  b.mz = 456.78;
149  testObject(b);
150 }
151 
152 
153 void testProduct()
154 {
155  Product a;
156  a.mz = 123.45;
157  a.charge = 2;
158  testObject(a);
159 
160  Product b;
161  b.mz = 456.78;
162  testObject(b);
163 }*/
164 
165 
167 {
168  if (os_) *os_ << "testTraData():\n";
169 
170  TraData a;
172 
173  // write 'a' out to a stream
174 
175  ostringstream oss;
176  XMLWriter writer(oss);
177  IO::write(writer, a);
178  if (os_) *os_ << oss.str() << endl;
179 
180  // read 'b' in from stream
181 
182  TraData b;
183  istringstream iss(oss.str());
184  IO::read(iss, b);
185 
186  // compare 'a' and 'b'
187 
189  if (diff && os_) *os_ << "diff:\n" << diff << endl;
190  unit_assert(!diff);
191 }
192 
193 
194 void test()
195 {
196  testCV();
197  testUserParam();
198  testCVParam();
199  //testNamedParamContainer<Contact>();
200  //testNamedParamContainer<Publication>();
201  /*testInstrument();
202  testConfiguration();
203  testPrecursor();
204  testProduct();*/
205  testTraData();
206 }
207 
208 
209 int main(int argc, char* argv[])
210 {
211  TEST_PROLOG_EX(argc, argv, "_TraData")
212 
213  try
214  {
215  if (argc>1 && !strcmp(argv[1],"-v")) os_ = &cout;
216  test();
217  }
218  catch (exception& e)
219  {
220  TEST_FAILED(e.what())
221  }
222  catch (...)
223  {
224  TEST_FAILED("Caught unknown exception.")
225  }
226 
228 }
229