ProteoWizard
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Functions | |
BOOST_BITFIELD_EX (Site, PWIZ_API_DECL,(Any)(1<< 0)(NTerminus)(1<< 1)(CTerminus)(1<< 2)(Alanine)(1<< 3)(Cysteine)(1<< 4)(AsparticAcid)(1<< 5)(GlutamicAcid)(1<< 6)(Phenylalanine)(1<< 7)(Glycine)(1<< 8)(Histidine)(1<< 9)(Isoleucine)(1<< 10)(Lysine)(1<< 11)(Leucine)(1<< 12)(Methionine)(1<< 13)(Asparagine)(1<< 14)(Proline)(1<< 15)(Glutamine)(1<< 16)(Arginine)(1<< 17)(Serine)(1<< 18)(Threonine)(1<< 19)(Selenocysteine)(1<< 20)(Valine)(1<< 21)(Tryptophan)(1<< 22)(Tyrosine)(1<< 23)) BOOST_ENUM_EX(Position | |
() Anywhere() AnyNTerminus() AnyCTerminus() | ProteinNTerminus (ProteinCTerminus)) BOOST_BITFIELD_EX(Classification |
() Anywhere() AnyNTerminus() AnyCTerminus()() | Any (1<< 0)(Artifact)(1<< 1)(ChemicalDerivative)(1<< 2)(CoTranslational)(1<< 3)(IsotopicLabel)(1<< 4)(Multiple)(1<< 5)(NLinkedGlycosylation)(1<< 6)(NonStandardResidue)(1<< 7)(OLinkedGlycosylation)(1<< 8)(OtherGlycosylation)(1<< 9)(Other)(1<< 10)(PostTranslational)(1<< 11)(PreTranslational)(1<< 12)(Substitution)(1<< 13)) struct PWIZ_API_DECL Modification |
a modification from Unimod | |
PWIZ_API_DECL Site | site (char symbol) |
returns the Site given a one-letter residue code, or: 'x' for Site::Any, 'n' for Site::NTerminus, 'c' for Site::CTerminus | |
PWIZ_API_DECL Position | position (CVID cvid=CVID_Unknown) |
returns a Position corresponding to one of the following CVIDs: CVID_Unknown: Position::Anywhere MS_modification_specificity_N_term: Position::AnyNTerminus MS_modification_specificity_C_term: Position::AnyCTerminus Else: invalid_argument exception | |
PWIZ_API_DECL const std::vector< Modification > & | modifications () |
the entire list of Unimod modifications | |
PWIZ_API_DECL std::vector < Modification > | modifications (double mass, double tolerance, tribool monoisotopic=true, tribool approved=true, Site site=Site::Any, Position position=Position::Anywhere, Classification classification=Classification::Any, tribool hidden=indeterminate) |
get a list of modifications by mass and tolerance; | |
PWIZ_API_DECL const Modification & | modification (CVID cvid) |
find a modification by CVID | |
PWIZ_API_DECL const Modification & | modification (const std::string &title) |
find a modification by title, e.g. "Phospho" not "Phosphorylation" |
Variables | |
PWIZ_API_DECL |
pwiz::data::unimod::BOOST_BITFIELD_EX | ( | Site | , |
PWIZ_API_DECL | , | ||
(Any)(1<< 0)(NTerminus)(1<< 1)(CTerminus)(1<< 2)(Alanine)(1<< 3)(Cysteine)(1<< 4)(AsparticAcid)(1<< 5)(GlutamicAcid)(1<< 6)(Phenylalanine)(1<< 7)(Glycine)(1<< 8)(Histidine)(1<< 9)(Isoleucine)(1<< 10)(Lysine)(1<< 11)(Leucine)(1<< 12)(Methionine)(1<< 13)(Asparagine)(1<< 14)(Proline)(1<< 15)(Glutamine)(1<< 16)(Arginine)(1<< 17)(Serine)(1<< 18)(Threonine)(1<< 19)(Selenocysteine)(1<< 20)(Valine)(1<< 21)(Tryptophan)(1<< 22)(Tyrosine)(1<< 23) | |||
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() Anywhere() AnyNTerminus() AnyCTerminus() pwiz::data::unimod::ProteinNTerminus | ( | ProteinCTerminus | ) |
Referenced by test().
() Anywhere() AnyNTerminus() AnyCTerminus()() pwiz::data::unimod::Any | ( | 1<< | 0 | ) |
a modification from Unimod
Definition at line 81 of file Unimod.hpp.
References position(), and site().
Referenced by test().
PWIZ_API_DECL Site pwiz::data::unimod::site | ( | char | symbol | ) |
PWIZ_API_DECL Position pwiz::data::unimod::position | ( | CVID | cvid = CVID_Unknown | ) |
PWIZ_API_DECL const std::vector<Modification>& pwiz::data::unimod::modifications | ( | ) |
the entire list of Unimod modifications
Referenced by test().
PWIZ_API_DECL std::vector<Modification> pwiz::data::unimod::modifications | ( | double | mass, |
double | tolerance, | ||
tribool | monoisotopic = true , |
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tribool | approved = true , |
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Site | site = Site::Any , |
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Position | position = Position::Anywhere , |
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Classification | classification = Classification::Any , |
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tribool | hidden = indeterminate |
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) |
get a list of modifications by mass and tolerance;
PWIZ_API_DECL const Modification& pwiz::data::unimod::modification | ( | CVID | cvid | ) |
find a modification by CVID
Referenced by pwiz::tradata::TextWriter::operator()(), test(), and testConversion().
PWIZ_API_DECL const Modification& pwiz::data::unimod::modification | ( | const std::string & | title | ) |
find a modification by title, e.g. "Phospho" not "Phosphorylation"
() Anywhere() AnyNTerminus() AnyCTerminus() pwiz::data::unimod::PWIZ_API_DECL |
Definition at line 71 of file Unimod.hpp.