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pwiz::data::pepxml Namespace Reference

Classes

struct  Specificity
struct  SampleEnzyme
struct  SearchDatabase
struct  Q3RatioResult
struct  RocDataPoint
struct  ErrorPoint
struct  DistributionPoint
struct  MixtureModel
struct  PeptideProphetSummary
struct  PeptideProphetResult
struct  AnalysisResult
struct  AlternativeProtein
struct  ModAminoAcidMass
struct  ModificationInfo
struct  Parameter
struct  SearchScore
struct  SearchHit
struct  SearchResult
struct  EnzymaticSearchConstraint
struct  AminoAcidModification
struct  SearchSummary
 Database search settings. More...
struct  AnalysisTimestamp
 Reference for analysis applied to current run (time corresponds with analysis_summary/, id corresponds with analysis_result/) More...
struct  SpectrumQuery
struct  MSMSRunSummary
struct  AnalysisSummary
struct  DataFilter
struct  DatasetDerivation
 Source and filtering criteria used to generate dataset. More...
struct  MSMSPipelineAnalysis
struct  Match
struct  MatchData

Typedefs

typedef boost::shared_ptr
< Parameter
ParameterPtr
typedef boost::shared_ptr
< SearchScore
SearchScorePtr
typedef boost::shared_ptr
< SearchHit
SearchHitPtr
typedef boost::shared_ptr
< SearchResult
SearchResultPtr
typedef boost::shared_ptr
< SearchSummary
SearchSummaryPtr
typedef boost::shared_ptr
< SpectrumQuery
SpectrumQueryPtr
typedef boost::shared_ptr
< AnalysisSummary
AnalysisSummaryPtr
typedef boost::shared_ptr
< DataFilter
DataFilterPtr
typedef boost::shared_ptr
< DatasetDerivation
DatasetDerivationPtr
typedef boost::shared_ptr< MatchMatchPtr

Functions

void setLogStream (std::ostream &os)
PWIZ_API_DECL bool operator== (const SearchHitPtr left, const SearchHitPtr right)
PWIZ_API_DECL bool operator== (SearchResultPtr left, SearchResultPtr right)
PWIZ_API_DECL bool operator== (const SearchSummaryPtr left, const SearchSummaryPtr right)
PWIZ_API_DECL bool operator== (const SpectrumQueryPtr left, const SpectrumQueryPtr right)
PWIZ_API_DECL bool operator== (const MatchPtr left, const MatchPtr right)

Typedef Documentation

typedef boost::shared_ptr<Parameter> pwiz::data::pepxml::ParameterPtr

Definition at line 310 of file MinimumPepXML.hpp.

typedef boost::shared_ptr<SearchScore> pwiz::data::pepxml::SearchScorePtr

Definition at line 324 of file MinimumPepXML.hpp.

typedef boost::shared_ptr<SearchHit> pwiz::data::pepxml::SearchHitPtr

Definition at line 359 of file MinimumPepXML.hpp.

Definition at line 381 of file MinimumPepXML.hpp.

Definition at line 464 of file MinimumPepXML.hpp.

Definition at line 520 of file MinimumPepXML.hpp.

Definition at line 567 of file MinimumPepXML.hpp.

typedef boost::shared_ptr<DataFilter> pwiz::data::pepxml::DataFilterPtr

Definition at line 583 of file MinimumPepXML.hpp.

Definition at line 595 of file MinimumPepXML.hpp.

typedef boost::shared_ptr<Match> pwiz::data::pepxml::MatchPtr

Definition at line 668 of file MinimumPepXML.hpp.


Function Documentation

void pwiz::data::pepxml::setLogStream ( std::ostream &  os)
PWIZ_API_DECL bool pwiz::data::pepxml::operator== ( const SearchHitPtr  left,
const SearchHitPtr  right 
)
PWIZ_API_DECL bool pwiz::data::pepxml::operator== ( SearchResultPtr  left,
SearchResultPtr  right 
)
PWIZ_API_DECL bool pwiz::data::pepxml::operator== ( const SearchSummaryPtr  left,
const SearchSummaryPtr  right 
)
PWIZ_API_DECL bool pwiz::data::pepxml::operator== ( const SpectrumQueryPtr  left,
const SpectrumQueryPtr  right 
)
PWIZ_API_DECL bool pwiz::data::pepxml::operator== ( const MatchPtr  left,
const MatchPtr  right 
)