pwiz::proteome::IPIFASTADatabase Class Reference

class for accessing data in ipi.*.fasta files More...

#include <IPIFASTADatabase.hpp>

List of all members.

Classes
struct	Record
	structure for holding peptide info More...

Public Types
typedef std::vector< Record > ::const_iterator	const_iterator
	typedef to simplify declaration of Record iterator

Public Member Functions
	IPIFASTADatabase (const std::string &filename)
	constructor reads in entire file
	~IPIFASTADatabase ()
const std::vector< Record > &	records () const
	access to the data in memory
const_iterator	begin ()
const_iterator	end ()

Private Attributes
std::auto_ptr< Impl >	impl_

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Detailed Description

class for accessing data in ipi.*.fasta files

Definition at line 40 of file IPIFASTADatabase.hpp.

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Member Typedef Documentation

typedef std::vector<Record>::const_iterator pwiz::proteome::IPIFASTADatabase::const_iterator

typedef to simplify declaration of Record iterator

Definition at line 64 of file IPIFASTADatabase.hpp.

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Constructor & Destructor Documentation

pwiz::proteome::IPIFASTADatabase::IPIFASTADatabase

(

const std::string &

filename

)

constructor reads in entire file

pwiz::proteome::IPIFASTADatabase::~IPIFASTADatabase

(

)

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Member Function Documentation

const std::vector<Record>& pwiz::proteome::IPIFASTADatabase::records

(

)

const

access to the data in memory

Referenced by test(), and testRealDatabase().

const_iterator pwiz::proteome::IPIFASTADatabase::begin

(

)

const_iterator pwiz::proteome::IPIFASTADatabase::end

(

)

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Member Data Documentation

std::auto_ptr<Impl> pwiz::proteome::IPIFASTADatabase::impl_

private

Definition at line 71 of file IPIFASTADatabase.hpp.

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The documentation for this class was generated from the following file:

• /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/utility/proteome/IPIFASTADatabase.hpp