Translates data from a MinimumPepXML object into a IdentData object tree when a translation is known. More...

Public Member Functions
	Pep2MzIdent (const MSMSPipelineAnalysis &mspa, IdentDataPtr result=IdentDataPtr(new IdentData()))
	Initialized the member variables.
void	clear ()
	Resets the member variables.
bool	operator() (const MSMSPipelineAnalysis &pepxml, IdentDataPtr mzid)
IdentDataPtr	translate ()
	Translates all known tags in the pepXML object tree into the IdentData object tree.
void	setMspa (const MSMSPipelineAnalysis &mspa)
	Clears fields and then sets the _mspa field to the address of mspa.
IdentDataPtr	getIdentData () const
	Returns the IdentDataPtr object.
void	setDebug (bool debug)
bool	getDebug () const
void	setVerbose (bool verbose)
bool	getVerbose () const
void	addParamMap (std::vector< CVMapPtr > &map)
void	setParamMap (std::vector< CVMapPtr > &map)
const std::vector< CVMapPtr > &	getParamMap () const

Private Attributes
boost::shared_ptr< Impl >	pimpl

Detailed Description

Translates data from a MinimumPepXML object into a IdentData object tree when a translation is known.

The IdentData object initializes a cvList with the "MS" and "UO" elements.

The translate method is used to copy data. The clear method resets the IdentData object, null's out the MSMSPipelineAnalysis.

Definition at line 46 of file Pep2MzIdent.hpp.

Constructor & Destructor Documentation

pwiz::identdata::Pep2MzIdent::Pep2MzIdent	(	const MSMSPipelineAnalysis &	mspa,
		IdentDataPtr	result = `IdentDataPtr(new IdentData())`
	)

Initialized the member variables.

Also adds the "MS" and "UO" CV's to the cvList.

void pwiz::identdata::Pep2MzIdent::clear ( )

Resets the member variables.

bool pwiz::identdata::Pep2MzIdent::operator()	(	const MSMSPipelineAnalysis &	pepxml,
		IdentDataPtr	mzid
	)

IdentDataPtr pwiz::identdata::Pep2MzIdent::translate ( )

Translates all known tags in the pepXML object tree into the IdentData object tree.

The resulting IdentDataPtr is returned.

Referenced by test().

void pwiz::identdata::Pep2MzIdent::setMspa ( const MSMSPipelineAnalysis & mspa )

Clears fields and then sets the _mspa field to the address of mspa.

IdentDataPtr pwiz::identdata::Pep2MzIdent::getIdentData ( ) const

Returns the IdentDataPtr object.

If a translation has not been done, or if clear has been called, then an empty IdentData will be return in the IdentDataPtr object.

void pwiz::identdata::Pep2MzIdent::setDebug ( bool debug )

bool pwiz::identdata::Pep2MzIdent::getDebug ( ) const

void pwiz::identdata::Pep2MzIdent::setVerbose ( bool verbose )

bool pwiz::identdata::Pep2MzIdent::getVerbose ( ) const

void pwiz::identdata::Pep2MzIdent::addParamMap ( std::vector< CVMapPtr > & map )

void pwiz::identdata::Pep2MzIdent::setParamMap ( std::vector< CVMapPtr > & map )

const std::vector<CVMapPtr>& pwiz::identdata::Pep2MzIdent::getParamMap ( ) const

boost::shared_ptr<Impl> pwiz::identdata::Pep2MzIdent::pimpl

private

Definition at line 88 of file Pep2MzIdent.hpp.

The documentation for this class was generated from the following file: