pwiz::frequency::PeakDetectorNaive Class Reference

Naive implementation of the PeakDetector interface. More...

#include <PeakDetectorNaive.hpp>

Inheritance diagram for pwiz::frequency::PeakDetectorNaive:

List of all members.

Public Member Functions
virtual double	noiseFactor () const =0
virtual unsigned int	detectionRadius () const =0
PeakDetector interface
virtual void	findPeaks (const pwiz::data::FrequencyData &fd, pwiz::data::peakdata::Scan &result) const =0
	Find the peaks in the frequency data, filling in Scan structure.
virtual	~PeakDetectorNaive ()
Public Member Functions inherited from pwiz::frequency::PeakDetector
virtual	~PeakDetector ()

Static Public Member Functions
static std::auto_ptr < PeakDetectorNaive >	create (double noiseFactor=5, unsigned int detectionRadius=2)
	create an instance.

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Detailed Description

Naive implementation of the PeakDetector interface.

Reports peaks where:

1. magnitude > noise*noiseFactor
2. magnitude is increasing on [center-detectionRadius, center]
3. magnitude is decreasing on [center, center+detectionRadius]

All peaks are reported as charge==1

Definition at line 46 of file PeakDetectorNaive.hpp.

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Constructor & Destructor Documentation

virtual pwiz::frequency::PeakDetectorNaive::~PeakDetectorNaive ( )

inlinevirtual

Definition at line 60 of file PeakDetectorNaive.hpp.

{}

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Member Function Documentation

static std::auto_ptr<PeakDetectorNaive> pwiz::frequency::PeakDetectorNaive::create ( double  noiseFactor = 5, unsigned int  detectionRadius = 2  )

static

create an instance.

virtual double pwiz::frequency::PeakDetectorNaive::noiseFactor ( ) const

pure virtual

Referenced by testCreation().

virtual unsigned int pwiz::frequency::PeakDetectorNaive::detectionRadius ( ) const

pure virtual

Referenced by testCreation().

virtual void pwiz::frequency::PeakDetectorNaive::findPeaks ( const pwiz::data::FrequencyData &  fd, pwiz::data::peakdata::Scan &  result  ) const

pure virtual

Find the peaks in the frequency data, filling in Scan structure.

Implements pwiz::frequency::PeakDetector.

Referenced by testFind().

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The documentation for this class was generated from the following file:

• /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/analysis/frequency/PeakDetectorNaive.hpp