pwiz::analysis::ProteinList_DecoyGenerator Class Reference

ProteinList decoy generator for creating decoy proteins on the fly. More...

#include <ProteinList_DecoyGenerator.hpp>

Inheritance diagram for pwiz::analysis::ProteinList_DecoyGenerator:

List of all members.

Classes
struct	Predicate
	client-implemented generator predicate – called during construction of ProteinList_DecoyGenerator to create a decoy protein from a target protein More...

Public Types
typedef boost::shared_ptr < Predicate >	PredicatePtr

Public Member Functions
	ProteinList_DecoyGenerator (const ProteinListPtr &original, const PredicatePtr &predicate)
ProteinList interface
virtual size_t	size () const
virtual size_t	find (const std::string &id) const
virtual ProteinPtr	protein (size_t index, bool getSequence=true) const
Public Member Functions inherited from pwiz::proteome::ProteinListWrapper
	ProteinListWrapper (const ProteinListPtr &inner)
Public Member Functions inherited from pwiz::proteome::ProteinList
virtual bool	empty () const
virtual IndexList	findKeyword (const std::string &keyword, bool caseSensitive=true) const
virtual	~ProteinList ()

Private Member Functions
	ProteinList_DecoyGenerator (const ProteinList_DecoyGenerator &)
ProteinList_DecoyGenerator &	operator= (const ProteinList_DecoyGenerator &)

Private Attributes
boost::shared_ptr< Impl >	impl_

Additional Inherited Members
Protected Attributes inherited from pwiz::proteome::ProteinListWrapper
ProteinListPtr	inner_

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Detailed Description

ProteinList decoy generator for creating decoy proteins on the fly.

Definition at line 40 of file ProteinList_DecoyGenerator.hpp.

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Member Typedef Documentation

typedef boost::shared_ptr<Predicate> pwiz::analysis::ProteinList_DecoyGenerator::PredicatePtr

Definition at line 60 of file ProteinList_DecoyGenerator.hpp.

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Constructor & Destructor Documentation

pwiz::analysis::ProteinList_DecoyGenerator::ProteinList_DecoyGenerator	(	const ProteinListPtr &	original,
		const PredicatePtr &	predicate
	)

pwiz::analysis::ProteinList_DecoyGenerator::ProteinList_DecoyGenerator ( const ProteinList_DecoyGenerator &  )

private

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Member Function Documentation

virtual size_t pwiz::analysis::ProteinList_DecoyGenerator::size ( ) const

virtual

Reimplemented from pwiz::proteome::ProteinListWrapper.

virtual size_t pwiz::analysis::ProteinList_DecoyGenerator::find ( const std::string &  id ) const

virtual

Reimplemented from pwiz::proteome::ProteinList.

virtual ProteinPtr pwiz::analysis::ProteinList_DecoyGenerator::protein ( size_t  index, bool  getSequence = true  ) const

virtual

Reimplemented from pwiz::proteome::ProteinListWrapper.

ProteinList_DecoyGenerator& pwiz::analysis::ProteinList_DecoyGenerator::operator= ( const ProteinList_DecoyGenerator &  )

private

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Member Data Documentation

boost::shared_ptr<Impl> pwiz::analysis::ProteinList_DecoyGenerator::impl_

private

Definition at line 72 of file ProteinList_DecoyGenerator.hpp.

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The documentation for this class was generated from the following file:

• /Users/parag/_Research/pwiz/svn/trunk/pwiz/pwiz/analysis/proteome_processing/ProteinList_DecoyGenerator.hpp