ProteoWizard
SpectrumList_mzXML.hpp
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1 //
2 // $Id: SpectrumList_mzXML.hpp 1189 2009-08-14 17:36:06Z chambm $
3 //
4 //
5 // Original author: Darren Kessner <darren@proteowizard.org>
6 //
7 // Copyright 2008 Spielberg Family Center for Applied Proteomics
8 // Cedars-Sinai Medical Center, Los Angeles, California 90048
9 //
10 // Licensed under the Apache License, Version 2.0 (the "License");
11 // you may not use this file except in compliance with the License.
12 // You may obtain a copy of the License at
13 //
14 // http://www.apache.org/licenses/LICENSE-2.0
15 //
16 // Unless required by applicable law or agreed to in writing, software
17 // distributed under the License is distributed on an "AS IS" BASIS,
18 // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
19 // See the License for the specific language governing permissions and
20 // limitations under the License.
21 //
22 
23 
24 #ifndef _SPECTRUMLIST_MZXML_HPP_
25 #define _SPECTRUMLIST_MZXML_HPP_
26 
27 
29 #include "SpectrumListBase.hpp"
30 #include <iosfwd>
31 #include <stdexcept>
32 
33 
34 namespace pwiz {
35 namespace msdata {
36 
37 
38 /// implementation of SpectrumList, backed by an mzXML file
40 {
41  public:
42 
43  static SpectrumListPtr create(boost::shared_ptr<std::istream> is,
44  const MSData& msd,
45  bool indexed = true);
46 
47  /// exception thrown if create(*,*,true) is called and
48  /// the mzXML index cannot be found
49  struct index_not_found : public std::runtime_error
50  {
51  index_not_found(const std::string& what) : std::runtime_error(what.c_str()) {}
52  };
53 };
54 
55 
56 } // namespace msdata
57 } // namespace pwiz
58 
59 
60 #endif // _SPECTRUMLIST_MZXML_HPP_
61