SpectrumList_Waters.hpp

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//
// $Id: SpectrumList_Waters.hpp 4005 2012-10-12 21:37:32Z chambm $
//
//
// Original author: Matt Chambers <matt.chambers .@. vanderbilt.edu>
//
// Copyright 2009 Vanderbilt University - Nashville, TN 37232
//
// Licensed under the Apache License, Version 2.0 (the "License"); 
// you may not use this file except in compliance with the License. 
// You may obtain a copy of the License at 
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software 
// distributed under the License is distributed on an "AS IS" BASIS, 
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
// See the License for the specific language governing permissions and 
// limitations under the License.
//


#include "pwiz/utility/misc/Export.hpp"
#include "pwiz/data/msdata/SpectrumListBase.hpp"
#include "Reader_Waters_Detail.hpp"
#include "pwiz/utility/misc/Container.hpp"
#include "pwiz/utility/misc/String.hpp"
#include "pwiz/utility/misc/Stream.hpp"


using boost::shared_ptr;


namespace pwiz {
namespace msdata {
namespace detail {


//
// SpectrumList_Waters
//
class PWIZ_API_DECL SpectrumList_Waters : public SpectrumListBase
{
    public:

    virtual size_t size() const;
    virtual const SpectrumIdentity& spectrumIdentity(size_t index) const;
    virtual size_t find(const string& id) const;
    virtual SpectrumPtr spectrum(size_t index, bool getBinaryData) const;
    virtual SpectrumPtr spectrum(size_t index, DetailLevel detailLevel) const;

#ifdef PWIZ_READER_WATERS
    SpectrumList_Waters(MSData& msd, RawDataPtr rawdata);

    private:

    MSData& msd_;
    RawDataPtr rawdata_;
    size_t size_;

    struct IndexEntry : public SpectrumIdentity
    {
        int function;
        int process;
        int scan;
    };

    mutable vector<IndexEntry> index_;
    mutable map<string, size_t> idToIndexMap_;

    void createIndex();
#endif // PWIZ_READER_WATERS
};

} // detail
} // msdata
} // pwiz