ProteinList_FilterTest.cpp File Reference

#include "ProteinList_Filter.hpp"
#include "pwiz/utility/misc/unit.hpp"
#include "pwiz/utility/misc/IntegerSet.hpp"
#include "pwiz/utility/misc/Std.hpp"
#include <boost/assign.hpp>

Go to the source code of this file.

Classes
struct	SelectedIndexPredicate

Functions
void	printProteinList (const ProteinList &pl, ostream &os)
ProteinListPtr	createProteinList ()
void	testSelectedIndices (ProteinListPtr pl)
void	testIndexSet (ProteinListPtr pl)
void	testIdSet (ProteinListPtr pl)
void	test ()
int	main (int argc, char *argv[])

Variables
ostream *	os_ = 0

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Function Documentation

void printProteinList	(	const ProteinList &	pl,
		ostream &	os
	)

Definition at line 41 of file ProteinList_FilterTest.cpp.

References pwiz::proteome::ProteinList::protein(), and pwiz::proteome::ProteinList::size().

Referenced by createProteinList(), testIdSet(), testIndexSet(), and testSelectedIndices().

{
    os << "size: " << pl.size() << endl;

    for (size_t i=0, end=pl.size(); i<end; i++)
    {
        ProteinPtr protein = pl.protein(i, false);
        os << protein->index << " " 
           << protein->id << " "
           << endl;
    }
}

ProteinListPtr createProteinList

(

)

Definition at line 55 of file ProteinList_FilterTest.cpp.

References os_, and printProteinList().

Referenced by test().

{
    shared_ptr<ProteinListSimple> pl(new ProteinListSimple);

    for (size_t i=0; i<10; ++i)
    {
        ProteinPtr protein(new Protein("Pro" + lexical_cast<string>(i+1), i, "", string(16, 'A'+i)));
        pl->proteins.push_back(protein);
    }

    if (os_)
    {
        *os_ << "original protein list:\n";
        printProteinList(*pl, *os_); 
        *os_ << endl;
    }

    return pl;
}

void testSelectedIndices

(

ProteinListPtr

pl

)

Definition at line 98 of file ProteinList_FilterTest.cpp.

References os_, printProteinList(), pwiz::analysis::ProteinList_Filter::protein(), pwiz::analysis::ProteinList_Filter::size(), and unit_assert_operator_equal.

Referenced by test().

{
    if (os_) *os_ << "testSelectedIndices:\n";

    ProteinList_Filter filter(pl, SelectedIndexPredicate());
    
    if (os_) 
    {
        printProteinList(filter, *os_);
        *os_ << endl;
    }

    unit_assert_operator_equal(3, filter.size());
    unit_assert_operator_equal("Pro2", filter.protein(0)->id);
    unit_assert_operator_equal("Pro4", filter.protein(1)->id);
    unit_assert_operator_equal("Pro6", filter.protein(2)->id);
}

void testIndexSet

(

ProteinListPtr

pl

)

Definition at line 117 of file ProteinList_FilterTest.cpp.

References pwiz::util::IntegerSet::insert(), os_, printProteinList(), pwiz::analysis::ProteinList_Filter::protein(), pwiz::analysis::ProteinList_Filter::size(), and unit_assert_operator_equal.

Referenced by test().

{
    if (os_) *os_ << "testIndexSet:\n";

    IntegerSet indexSet;
    indexSet.insert(3,5);
    indexSet.insert(7);
    indexSet.insert(9);

    ProteinList_Filter filter(pl, ProteinList_FilterPredicate_IndexSet(indexSet));

    if (os_) 
    {
        printProteinList(filter, *os_);
        *os_ << endl;
    }

    unit_assert_operator_equal(5, filter.size());
    unit_assert_operator_equal("Pro4", filter.protein(0)->id);
    unit_assert_operator_equal("Pro5", filter.protein(1)->id);
    unit_assert_operator_equal("Pro6", filter.protein(2)->id);
    unit_assert_operator_equal("Pro8", filter.protein(3)->id);
    unit_assert_operator_equal("Pro10", filter.protein(4)->id);
}

void testIdSet

(

ProteinListPtr

pl

)

Definition at line 143 of file ProteinList_FilterTest.cpp.

References os_, printProteinList(), pwiz::analysis::ProteinList_Filter::protein(), pwiz::analysis::ProteinList_Filter::size(), and unit_assert_operator_equal.

Referenced by test().

{
    if (os_) *os_ << "testIdSet:\n";

    set<string> idSet;
    idSet += "Pro2", "Pro3", "Pro4", "Pro7";

    ProteinList_Filter filter(pl, ProteinList_FilterPredicate_IdSet(idSet));
    
    if (os_) 
    {
        printProteinList(filter, *os_);
        *os_ << endl;
    }

    unit_assert_operator_equal(4, filter.size());
    unit_assert_operator_equal("Pro2", filter.protein(0)->id);
    unit_assert_operator_equal("Pro3", filter.protein(1)->id);
    unit_assert_operator_equal("Pro4", filter.protein(2)->id);
    unit_assert_operator_equal("Pro7", filter.protein(3)->id);
}

void test

(

)

Definition at line 166 of file ProteinList_FilterTest.cpp.

References createProteinList(), testIdSet(), testIndexSet(), and testSelectedIndices().

{
    ProteinListPtr pl = createProteinList();
    testSelectedIndices(pl);
    testIndexSet(pl);
    testIdSet(pl);
}

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 175 of file ProteinList_FilterTest.cpp.

References e(), os_, test(), TEST_EPILOG, TEST_FAILED, and TEST_PROLOG.

{
    TEST_PROLOG(argc, argv)

    try
    {
        if (argc>1 && !strcmp(argv[1],"-v")) os_ = &cout;
        test();
    }
    catch (exception& e)
    {
        TEST_FAILED(e.what())
    }
    catch (...)
    {
        TEST_FAILED("Caught unknown exception.")
    }

    TEST_EPILOG
}

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Variable Documentation

ostream* os_ = 0

Definition at line 38 of file ProteinList_FilterTest.cpp.