ProteoWizard
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#include "PeptideMatcher.hpp"
#include "pwiz/utility/misc/unit.hpp"
#include "pwiz/utility/misc/Std.hpp"
Go to the source code of this file.
Functions | |
PidfPtr | makePeptideID_dataFetcher (const char *samplePepXML) |
SpectrumQuery | makeSpectrumQuery (double precursorNeutralMass, double rt, int charge, string sequence, double score, int startScan, int endScan) |
FeaturePtr | makeFeature (double mz, double retentionTime) |
void | test () |
int | main (int argc, char *argv[]) |
Variables | |
ostream * | os_ = 0 |
const char * | samplePepXML_a = "</msms_pipeline_analysis>\n" |
const char * | samplePepXML_b = "</msms_pipeline_analysis>\n" |
PidfPtr makePeptideID_dataFetcher | ( | const char * | samplePepXML | ) |
Definition at line 120 of file PeptideMatcherTest.cpp.
SpectrumQuery makeSpectrumQuery | ( | double | precursorNeutralMass, |
double | rt, | ||
int | charge, | ||
string | sequence, | ||
double | score, | ||
int | startScan, | ||
int | endScan | ||
) |
Definition at line 129 of file PeptideMatcherTest.cpp.
References pwiz::data::pepxml::PeptideProphetResult::allNttProb, pwiz::data::pepxml::AnalysisResult::analysis, pwiz::data::pepxml::SearchHit::analysisResult, pwiz::data::pepxml::SpectrumQuery::assumedCharge, pwiz::data::pepxml::SpectrumQuery::endScan, pwiz::data::pepxml::SearchHit::peptide, pwiz::data::pepxml::AnalysisResult::peptideProphetResult, pwiz::data::pepxml::SpectrumQuery::precursorNeutralMass, pwiz::data::pepxml::PeptideProphetResult::probability, pwiz::data::pepxml::SpectrumQuery::retentionTimeSec, pwiz::data::pepxml::SearchResult::searchHit, pwiz::data::pepxml::SpectrumQuery::searchResult, and pwiz::data::pepxml::SpectrumQuery::startScan.
FeaturePtr makeFeature | ( | double | mz, |
double | retentionTime | ||
) |
Definition at line 165 of file PeptideMatcherTest.cpp.
References pwiz::chemistry::Ion::mz().
void test | ( | ) |
Definition at line 175 of file PeptideMatcherTest.cpp.
References pwiz::eharmony::PeptideMatcher::calculateDeltaMZDistribution(), pwiz::eharmony::PeptideMatcher::calculateDeltaRTDistribution(), e(), epsilon, pwiz::eharmony::PeptideMatcher::getDeltaMZParams(), pwiz::eharmony::PeptideMatcher::getDeltaRTParams(), pwiz::eharmony::PeptideMatcher::getMatches(), makeFeature(), makePeptideID_dataFetcher(), makeSpectrumQuery(), os_, samplePepXML_a, samplePepXML_b, unit_assert, unit_assert_equal, and pwiz::data::pepxml::SpectrumQuery::write().
int main | ( | int | argc, |
char * | argv[] | ||
) |
ostream* os_ = 0 |
Definition at line 31 of file PeptideMatcherTest.cpp.
const char* samplePepXML_a = "</msms_pipeline_analysis>\n" |
Definition at line 33 of file PeptideMatcherTest.cpp.
Referenced by test().
const char* samplePepXML_b = "</msms_pipeline_analysis>\n" |
Definition at line 76 of file PeptideMatcherTest.cpp.
Referenced by test().